Structure of PDB 5jbh Chain F

Receptor sequence
>5jbhF (length=217) Species: 272844 (Pyrococcus abyssi GE5) [Search protein sequence]
MSQEWKEYAKRVLDEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEII
DVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGI
GHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEG
SVRVRLIPGPRGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAKA
VFNALYNTNRVAISPEM
3D structure
PDB5jbh Cryo-EM study of start codon selection during archaeal translation initiation.
ChainF
Resolution5.34 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna F T71 V72 R73 M74 D76 S77 R80 R84 H102 S151 V166 I167 G168 W184 Q186 T187 F188 R192 T193 K199 T71 V72 R73 M74 D76 S77 R80 R84 H102 S151 V166 I167 G168 W184 Q186 T187 F188 R192 T193 K199
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:5jbh, PDBe:5jbh, PDBj:5jbh
PDBsum5jbh
PubMed27819266
UniProtQ8U017|RS5_PYRFU Small ribosomal subunit protein uS5 (Gene Name=rps5)

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