Structure of PDB 5j4d Chain F

Receptor sequence

>5j4dF (length=204) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence]

MKGILGVKVGMTRIFRDDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLG
FLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGE
RVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRV
YKGKKMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGPNGGLVIVRE
TKKA

3D structure

PDB

5j4d Structural Basis for Translation Termination on a Pseudouridylated Stop Codon.

Chain

Resolution

3.1 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	F	M11 T12 R13 P22 Q35 R37 K41 D42 Y44 Q48 R58 N60 R61 P62 G65 H66 K69 R76 L78 R79 E80 R82 S108 K109 G110 R111 G112 F113 G115 M117 K118 R119 N121 F122 A123 D127 S128 H129 G130 H132 K133 I134 H135 R136 H137 P138 G139 S140 I141 G142 N143 R144 K145 T146 P147 G148 R149 V150 Y151 K152 G153 K154 M156 A157 H159 R164 T166 M168 N169 L170 K185 G186 A187 V188 P189 G190 P191 N192 K202 K203 A204	M11 T12 R13 P22 Q35 R37 K41 D42 Y44 Q48 R58 N60 R61 P62 G65 H66 K69 R76 L78 R79 E80 R82 S108 K109 G110 R111 G112 F113 G115 M117 K118 R119 N121 F122 A123 D127 S128 H129 G130 H132 K133 I134 H135 R136 H137 P138 G139 S140 I141 G142 N143 R144 K145 T146 P147 G148 R149 V150 Y151 K152 G153 K154 M156 A157 H159 R164 T166 M168 N169 L170 K185 G186 A187 V188 P189 G190 P191 N192 K202 K203 A204
BS02	MG	F	R119 Y160	R119 Y160
BS03	MG	F	V165 T166	V165 T166
BS04	MG	F	P32 V33 D89 T90	P32 V33 D89 T90
BS05	MG	F	K8 M11 T24 A187 V188	K8 M11 T24 A187 V188
BS06	MG	F	Y151 K154	Y151 K154
BS07	MG	F	P32 T90	P32 T90
BS08	MG	F	P138 G139	P138 G139

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:5j4d, PDBe:5j4d, PDBj:5j4d
PDBsum	5j4d
PubMed	27107638
UniProt	Q72I04\|RL3_THET2 Large ribosomal subunit protein uL3 (Gene Name=rplC)

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