Structure of PDB 5d4e Chain F

Receptor sequence
>5d4eF (length=346) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence]
SDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLI
REVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIA
REGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKF
EYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQ
LQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDS
FYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLID
GREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFLD
3D structure
PDB5d4e The mechanism of RNA 5' capping with NAD(+), NADH and desphospho-CoA.
ChainF
Resolution3.08 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna F D79 V81 R82 L85 G89 L93 N191 R193 L194 S197 F209 E228 R231 F233 K234 S236 T237 Y238 T240 W241 D2 V4 R5 L8 G12 L16 N114 R116 L117 S120 F132 E151 R154 F156 K157 S159 T160 Y161 T163 W164
BS02 dna F G322 D326 S327 G245 D249 S250
BS03 MG F A292 G296 W299 A215 G219 W222
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003700 DNA-binding transcription factor activity
GO:0016987 sigma factor activity
GO:0046872 metal ion binding
Biological Process
GO:0006352 DNA-templated transcription initiation
GO:0006355 regulation of DNA-templated transcription
GO:0010468 regulation of gene expression
GO:2000142 regulation of DNA-templated transcription initiation
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5d4e, PDBe:5d4e, PDBj:5d4e
PDBsum5d4e
PubMed27383794
UniProtQ5SKW1

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