Structure of PDB 4by9 Chain F

Receptor sequence
>4by9F (length=366) Species: 2261 (Pyrococcus furiosus) [Search protein sequence]
FISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLKGEITKDLEELLNS
LKEKGYDEFVFEHPELSRRAKELGFSATTEFPNIAGERLRSNPEEFLGEN
WFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLR
EWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKK
ILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVA
PNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGA
KPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEE
LKKELEARIREIKEKY
3D structure
PDB4by9 The Structure of the Box C/D Enzyme Reveals Regulation of RNA Methylation.
ChainF
ResolutionN/A
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna F E190 K199 S280 R294 R297 G299 K301 P302 K304 W319 K324 R327 R358 E361 E190 K199 S280 R294 R297 G299 K301 P302 K304 W319 K324 R327 R358 E361
BS02 rna F E186 R189 F293 L296 R297 E186 R189 F293 L296 R297
BS03 rna F K175 A291 R294 K304 H305 K175 A291 R294 K304 H305
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0030515 snoRNA binding
Cellular Component
GO:0031428 box C/D methylation guide snoRNP complex
GO:0032040 small-subunit processome

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Molecular Function
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Cellular Component
External links
PDB RCSB:4by9, PDBe:4by9, PDBj:4by9
PDBsum4by9
PubMed24121435
UniProtQ8U4M1

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