Structure of PDB 3m7n Chain F

Receptor sequence
>3m7nF (length=246) Species: 2234 (Archaeoglobus fulgidus) [Search protein sequence]
PEKLIVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVF
GPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKE
AFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKG
MITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMD
GRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEVGEEMDEITE
3D structure
PDB3m7n Quantitative analysis of processive RNA degradation by the archaeal RNA exosome
ChainF
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.13.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna F R96 R97 A132 D133 S136 D180 R89 R90 A125 D126 S129 D173
Gene Ontology
Molecular Function
GO:0000175 3'-5'-RNA exonuclease activity
GO:0004527 exonuclease activity
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters
Biological Process
GO:0006401 RNA catabolic process
GO:0016075 rRNA catabolic process
Cellular Component
GO:0000177 cytoplasmic exosome (RNase complex)
GO:0000178 exosome (RNase complex)
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3m7n, PDBe:3m7n, PDBj:3m7n
PDBsum3m7n
PubMed20392821
UniProtO29757|RRP41_ARCFU Exosome complex component Rrp41 (Gene Name=rrp41)

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