Structure of PDB 3j9m Chain F

Receptor sequence

>3j9mF (length=250) Species: 9606 (Homo sapiens)

EPVLRKVELPVPTHRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLD
ILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSP
LWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLE
LPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIP
AVGLNVHSMLKHQTLVLTLPTVAFLEDKLLWQDSRYRPLYPFSLPYSDFP

3D structure

• PDB: 3j9m Ribosome. The structure of the human mitochondrial ribosome.
• Chain: F
• Resolution: 3.5 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	F	R92 I95 H97 Q98 M101 K104 N105 R108 Y111 K113 T114 K115 T116 R117 V120 R121 G122 R125 K126 Q130 K131 T133 G134 R135 A136 R137 H138 G139 R142 P144 L145 R147 G148 V151 A152 H153 P155 P158 Y161 Y163 P166 M167 K168 V169 R170 L172 K255 R281 P282 P285	R48 I51 H53 Q54 M57 K60 N61 R64 Y67 K69 T70 K71 T72 R73 V76 R77 G78 R81 K82 Q86 K87 T89 G90 R91 A92 R93 H94 G95 R98 P100 L101 R103 G104 V107 A108 H109 P111 P114 Y117 Y119 P122 M123 K124 V125 R126 L128 K211 R237 P238 P241

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0005515 protein binding

Biological Process

• GO:0006412 translation
• GO:0032543 mitochondrial translation

Cellular Component

• GO:0005739 mitochondrion
• GO:0005743 mitochondrial inner membrane
• GO:0005762 mitochondrial large ribosomal subunit
• GO:0005840 ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:3j9m, PDBe:3j9m, PDBj:3j9m
• PDBsum: 3j9m
• PubMed: 25838379
• UniProt: Q9BYD3|RM04_HUMAN Large ribosomal subunit protein uL4m (Gene Name=MRPL4)