Structure of PDB 3j7r Chain F

Receptor sequence

>3j7rF (length=225) Species: 9823 (Sus scrofa)

NFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMAR
MARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFV
KLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNA
LIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKK
TTHFVEGGDAGNREDQINRLIRRMN

3D structure

• PDB: 3j7r Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.
• Chain: F
• Resolution: 3.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	F	N26 F27 A28 I32 K33 R36 K37 F39 Q41 M43 R48 R49 K50 L51 Y53 E54 H58 Y59 H60 K61 Y63 R64 Q65 Y67 R68 R72 M73 R75 M76 R78 R98 G99 I100 N101 G102 P105 K106 K109 L113 R115 Q118 I119 A130 N133 M134 N148 L149 N153 K158 N165 K166 K167 R168 A178 R179 G182 K204 N208 K214 L215 S216 S217 R219 G220 G221 M222 K224 K225 R244 R247	N1 F2 A3 I7 K8 R11 K12 F14 Q16 M18 R23 R24 K25 L26 Y28 E29 H33 Y34 H35 K36 Y38 R39 Q40 Y42 R43 R47 M48 R50 M51 R53 R73 G74 I75 N76 G77 P80 K81 K84 L88 R90 Q93 I94 A105 N108 M109 N123 L124 N128 K133 N140 K141 K142 R143 A153 R154 G157 K179 N183 K189 L190 S191 S192 R194 G195 G196 M197 K199 K200 R219 R222
BS02	rna	F	R136 E139 K224 T226 T227 H228 E231	R111 E114 K199 T201 T202 H203 E206

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Dec 2 02:43:46 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '3j7r', asym_id = 'F', title = 'Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='3j7r', asym_id='F', title='Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0000463,0003723,0003735', uniprot = '', pdbid = '3j7r', asym_id = 'F'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000463,0003723,0003735', uniprot='', pdbid='3j7r', asym_id='F')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>