Structure of PDB 3gzt Chain F

Receptor sequence
>3gztF (length=255) [Search protein sequence]
PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFL
TKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELAD
LILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGC
LTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPREN
VAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQII
QAMSK
3D structure
PDB3gzt Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM
ChainF
Resolution3.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA F Q177 D228 D231 Q120 D171 D174
BS02 CA F T214 F215 E216 T157 F158 E159
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
Biological Process
GO:0046813 receptor-mediated virion attachment to host cell
Cellular Component
GO:0019028 viral capsid
GO:0039621 T=13 icosahedral viral capsid
GO:0039624 viral outer capsid
GO:0044165 host cell endoplasmic reticulum
GO:0044166 host cell endoplasmic reticulum lumen

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3gzt, PDBe:3gzt, PDBj:3gzt
PDBsum3gzt
PubMed19487668
UniProtP12476|VP7_ROTRH Outer capsid glycoprotein VP7

[Back to BioLiP]