Structure of PDB 3g2x Chain F

Receptor sequence
>3g2xF (length=132) Species: 212035 (Acanthamoeba polyphaga mimivirus) [Search protein sequence]
QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYK
EHSEQSYFNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGT
IRGDLANDIRENLIHASDSEDSAVDEISIWFP
3D structure
PDB3g2x Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
ChainF
Resolution2.7 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) K9 Y50 N113 H116 E127
Catalytic site (residue number reindexed from 1) K8 Y49 N112 H115 E126
Enzyme Commision number 2.7.4.6: nucleoside-diphosphate kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 TYD F H53 Y58 R86 T92 R103 I110 R111 H52 Y57 R85 T91 R102 I109 R110
Gene Ontology
Molecular Function
GO:0004550 nucleoside diphosphate kinase activity
Biological Process
GO:0006183 GTP biosynthetic process
GO:0006228 UTP biosynthetic process
GO:0006241 CTP biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3g2x, PDBe:3g2x, PDBj:3g2x
PDBsum3g2x
PubMed19439473
UniProtQ5UQL3|NDK_MIMIV Nucleoside diphosphate kinase (Gene Name=NDK)

[Back to BioLiP]