Structure of PDB 7oyd Chain EE

Receptor sequence

>7oydEE (length=262) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNR
LKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRL
IYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPD
PLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERH
PGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE
RDKRLAAKQSSG

3D structure

PDB

7oyd A molecular network of conserved factors keeps ribosomes dormant in the egg.

Chain

Resolution

2.3 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	EE	A2 R3 G4 P5 K6 K7 H8 K10 R11 M19 K22 G25 V26 F27 A28 P29 R30 T33 G34 P35 K37 R49 T57 G58 K62 K63 M66 Q67 R77 T81 R108 K128 V131 T133 K134 A144 R145 T146 R148 K155 P202 G203 R240	A1 R2 G3 P4 K5 K6 H7 K9 R10 M18 K21 G24 V25 F26 A27 P28 R29 T32 G33 P34 K36 R48 T56 G57 K61 K62 M65 Q66 R76 T80 R107 K127 V130 T132 K133 A143 R144 T145 R147 K154 P201 G202 R239

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:7oyd, PDBe:7oyd, PDBj:7oyd
PDBsum	7oyd
PubMed	36653451
UniProt	G1TK17\|RS4X_RABIT Small ribosomal subunit protein eS4 (Gene Name=RPS4X)

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