Structure of PDB 8ydb Chain E

Receptor sequence

>8ydbE (length=324) Species: 2053611 (Selenomonas sp.) [Search protein sequence]

VTLKSRPENLSFARCLNTTEAKFWQTDFLKRHTFKLPLLITDKAVLASKG
HEMPPDKLEKEIMDPNPQKSQSCTLSTECDTLRIDFGIKVLPVKESMYSC
SDYNYRTAIYQKIDEYIAEDGFLTLAKRYVNNIANARFLWRNRKGAEIIE
TIVTIEDKEYPSFNSKSFNLDTFVEDNATINEIAQQIADTFAGKREYLNI
YVTCFVKIGCAMEVYPSQEMTFDDDDKGKKLFKFEGSAGMHSQKINNALR
TIDTWYPDYTTYEFPIPVENYGAARSIGIPFRPDTKSFYKLIDRMILKNE
DLPIEDKHYVMAILIRGGMFSKKQ

3D structure

PDB

8ydb Mechanisms for HNH-mediated target DNA cleavage in type I CRISPR-Cas systems

Chain

Resolution

3.4 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	E	S20 F21 A22 R23 L55 Y107 R150 Q227 M229 Q252 K253 N256 R259 R284 R325 G326 G327 M328	S11 F12 A13 R14 L46 Y98 R141 Q218 M220 Q243 K244 N247 R250 R275 R316 G317 G318 M319
BS02	rna	E	E17 M328 K332 Q333	E8 M319 K323 Q324

External links

PDB	RCSB:8ydb, PDBe:8ydb, PDBj:8ydb
PDBsum	8ydb
PubMed	39047725

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