Structure of PDB 8v87 Chain E

Receptor sequence

>8v87E (length=156) Species: 1247190 (Saccharomyces cerevisiae BY4741) [Search protein sequence]

SAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKR
VVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKF
NVEYFAKEEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDK
PHMLKF

3D structure

PDB

8v87 The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis.

Chain

Resolution

2.66 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	E	S2 K5 W9 A17 L18 K19 K20 T21 R22 K23 A24 R26 Q28 K29 G45 R46 R48 N61 T62 F69 K70 N72 G73 P75 R77 R78 N80 R82 Y83 K108 I130 K131 R134 Q157 A161 S162 N167	S1 K4 W8 A16 L17 K18 K19 T20 R21 K22 A23 R25 Q27 K28 G44 R45 R47 N60 T61 F68 K69 N71 G72 P74 R76 R77 N79 R81 Y82 K107 I110 K111 R114 Q137 A141 S142 N147

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8v87, PDBe:8v87, PDBj:8v87
PDBsum	8v87
PubMed	38632236
UniProt	Q02326\|RL6A_YEAST Large ribosomal subunit protein eL6A (Gene Name=RPL6A)

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