Structure of PDB 8t5d Chain E

Receptor sequence

>8t5dE (length=201) Species: 562 (Escherichia coli) [Search protein sequence]

MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRA
EVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKM
YRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIIT
GELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEML
A

3D structure

PDB

8t5d How Dedicated Ribosomes Translate a Leaderless mRNA.

Chain

Resolution

3.2 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	E	N24 A26 H29 Q30 Y35 A36 A39 R40 Q41 T43 R44 A45 Q46 K47 R49 V52 T53 S55 K58 Q62 K63 G64 T65 G66 R67 A68 R69 G71 I77 W78 R79 S80 V83 T84 F85 Q90 Q94 K95 N97 K98 K99 M100 Y101 R102 P129 K130 T131 L159 R162 N163 H165 T173	N24 A26 H29 Q30 Y35 A36 A39 R40 Q41 T43 R44 A45 Q46 K47 R49 V52 T53 S55 K58 Q62 K63 G64 T65 G66 R67 A68 R69 G71 I77 W78 R79 S80 V83 T84 F85 Q90 Q94 K95 N97 K98 K99 M100 Y101 R102 P129 K130 T131 L159 R162 N163 H165 T173

External links

PDB	RCSB:8t5d, PDBe:8t5d, PDBj:8t5d
PDBsum	8t5d
PubMed	38185325
UniProt	A1AGK6\|RL4_ECOK1 Large ribosomal subunit protein uL4 (Gene Name=rplD)

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