Structure of PDB 8rdj Chain E

Receptor sequence
>8rdjE (length=1091) Species: 3728 (Sinapis alba) [Search protein sequence]
ANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATS
ISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIW
YATSEYLRQEMNPNFRMTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMS
DPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTR
RLVEVVQHIVVRRTDCGTIRGISVSPRNKSRMMSERIFIQTLIGRVLADD
IYIGSRCVAFRNQDLGIGLVNRFITFGTQSISIRTPFTCRSTSWICRLCY
GRSPTHGDLVELGEAVGIIAGQSIGEPGAEHVRAPYNGKIKFNEDLVHPT
RTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQVI
AEIRERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILSG
GSCGSSLILFSIHKDQDQMNIPFSDLLAKRRRNRFLIPISVEIPINGIFR
RNSIFAFFDDPRYRRKSSGILKYDRFFFIPEEVHILPESSAIMVENYSII
GVDTRITLNIRSQVGGLIRVERKKKRIELKIFSGDIHFPDKTDKISRHSG
ILIPPGKNWIYVQRITPTKKKFFVLVRPVATYEIADSINLATLFPKDLFR
EKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNWVRAFFVEVNT
KGLIRDFIRIGLRKRNNPMNPFYHGTIRMFSLLILSSSNCFRIGTIKNSS
GPLGTAIQISNFYSFLPLLTYNQISVIKYLQLDNFKYIFQVIHSYLIDEN
GRIFNLDPYSNLVLNPFKLNWYFLHQNYNTIISLGQFFCENVCIAKKEPY
LKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYE
GLPKVEQVLEVSLNLEKRIKGWNRCITRILGIPWGFLIGAELTIVQSRIS
LVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIG
LLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKA
ALRGRIDWLKGLKENVVLGGVIPAGTGFNKGDILFYHREFC
3D structure
PDB8rdj Structure of the plant plastid-encoded RNA polymerase.
ChainE
Resolution2.62 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna E T196 S197 G200 Y201 Q1291 T192 S193 G196 Y197 Q1041
BS02 ZN E C220 C293 C303 C216 C289 C299
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0009507 chloroplast

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8rdj, PDBe:8rdj, PDBj:8rdj
PDBsum8rdj
PubMed38428394
UniProtA0A6C0M829

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