Structure of PDB 8qyf Chain E

Receptor sequence
>8qyfE (length=179) Species: 1282 (Staphylococcus epidermidis) [Search protein sequence]
IPTVYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLY
INSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRF
ALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIE
KIQQDTDRDNFLTAAEAKEYGLIDEVMEP
3D structure
PDB8qyf Molecular insights into the dynamic modulation of bacterial ClpP function and oligomerization by peptidomimetic boronate compounds
ChainE
Resolution2.33 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.21.92: endopeptidase Clp.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 6V8 E G68 G69 S70 V71 S98 M99 H123 Q124 P125 L126 H142 I143 T146 G55 G56 S57 V58 S85 M86 H110 Q111 P112 L113 H129 I130 T133
Gene Ontology
Molecular Function
GO:0004176 ATP-dependent peptidase activity
GO:0004252 serine-type endopeptidase activity
GO:0008236 serine-type peptidase activity
GO:0051117 ATPase binding
Biological Process
GO:0006508 proteolysis
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins
Cellular Component
GO:0005737 cytoplasm
GO:0009368 endopeptidase Clp complex

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Biological Process
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Cellular Component
External links
PDB RCSB:8qyf, PDBe:8qyf, PDBj:8qyf
PDBsum8qyf
PubMed38296985
UniProtQ5HQW0|CLPP_STAEQ ATP-dependent Clp protease proteolytic subunit (Gene Name=clpP)

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