Structure of PDB 8pj1 Chain E

Receptor sequence

>8pj1E (length=140) Species: 9606 (Homo sapiens) [Search protein sequence]

GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIV
LEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVL
VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP

3D structure

PDB

8pj1 Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining

Chain

Resolution

3.4 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	E	G2 K3 C4 R5 G6 R8 T9 R11 K12 H16 R17 R18 Q20 K21 W22 H23 D24 K25 K28 K37 A38 A44 S45 H46 K48 K60 Q61 N63 S64 A65 I66 R67 K68 K76 P86 D88 G104 R107 K108 H110 V112 G113 D114 I115 R119 K124 S129 K137 K138	G1 K2 C3 R4 G5 R7 T8 R10 K11 H15 R16 R17 Q19 K20 W21 H22 D23 K24 K27 K36 A37 A43 S44 H45 K47 K59 Q60 N62 S63 A64 I65 R66 K67 K75 P85 D87 G103 R106 K107 H109 V111 G112 D113 I114 R118 K123 S128 K136 K137

External links

PDB	RCSB:8pj1, PDBe:8pj1, PDBj:8pj1
PDBsum	8pj1
PubMed
UniProt	P62266\|RS23_HUMAN Small ribosomal subunit protein uS12 (Gene Name=RPS23)