Structure of PDB 8kcc Chain E

Receptor sequence
>8kccE (length=98) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
PHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSS
AVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
3D structure
PDB8kcc Mechanism of heterochromatin remodeling revealed by the DDM1 bound nucleosome structures.
ChainE
Resolution3.1 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna E R42 T45 R72 R83 F84 Q85 R116 V117 T118 M120 R5 T8 R35 R46 F47 Q48 R79 V80 T81 M83
BS02 dna E H39 R40 P43 V46 K64 L65 P66 R69 H2 R3 P6 V9 K27 L28 P29 R32
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
Cellular Component
GO:0000786 nucleosome
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005694 chromosome
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0009536 plastid
GO:0010369 chromocenter

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Molecular Function
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Cellular Component
External links
PDB RCSB:8kcc, PDBe:8kcc, PDBj:8kcc
PDBsum8kcc
PubMed38870940
UniProtP59226|H31_ARATH Histone H3.1 (Gene Name=HTR2)

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