Structure of PDB 8k29 Chain E

Receptor sequence

>8k29E (length=302) Species: 979527 (Vibrio phage ICP1_2004_A) [Search protein sequence]

TKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVR
GNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSN
TLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFT
FSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFP
SQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEP
YGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVF
GG

3D structure

PDB

8k29 Structure of csy complex with long DNA State2

Chain

Resolution

3.18 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	E	A11 Y12 S13 R14 V44 A45 L94 W130 R131 S202 Q203 F205 K213 H225 Q227 K228 N231 R234 R257 R297 G298 G299 V300	A10 Y11 S12 R13 V43 A44 L93 W129 R130 S201 Q202 F204 K212 H224 Q226 K227 N230 R233 R256 R296 G297 G298 V299
BS02	dna	E	A8 V9 Q48 K59 G60 N61 I62 Q63 S212	A7 V8 Q47 K58 G59 N60 I61 Q62 S211

External links

PDB	RCSB:8k29, PDBe:8k29, PDBj:8k29
PDBsum	8k29
PubMed
UniProt	F1D5V6

[Back to BioLiP]