Structure of PDB 8ekk Chain E

Receptor sequence
>8ekkE (length=533) Species: 645463 (Clostridioides difficile R20291) [Search protein sequence]
EDLDTDNDNIPDSYERNGYTIKDLIAVKWEDSFAEQGYKKYVSNYLESNT
AGDPYTDYEKASGSFDKAIKTEARDPLVAAYPIVGVGMEKLIISTNEHAS
TDQGKTVSRATAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMY
KVTPTTNLVLDGDTLSTIKAQENQIGNNLSPGDTYPKKGLSPLALNTMDQ
FSSRLIPINYDQLKKLDAGKQIKLETTQVSGNFGTKNSSGQIVTEGNSWS
DYISQIDSISASIILDTENESYERRVTAKNLQDPEDKTPELTIGEAIEKA
FGATKKDGLLYFNDIPIDESCVELIFDDNTANKIKDSLKTLSDKKIYNVK
LERGMNILIKTPTYFTNFDDYNNYPSTIPMSELKPYKRYVFSGYSGYTKF
SYEFETTENLSITELNSVKIPTDQEIMDAHKIYFADLNTYINGMYFAPTQ
TNKEALDYIQKYRVEATLQYSGFKDIGTKDKEMRNYLGDPNQPKTNYVNL
RSYFTGGENIMTYKKLRIYAITPDDRELLVLSV
3D structure
PDB8ekk Calcium-mediated Pore Formation of Clostridioides difficile Binary Toxin
ChainE
Resolution3.28 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA E D222 D224 E231 N260 E263 D273 D6 D8 E15 N44 E47 D57
BS02 CA E D220 D222 D224 I226 D4 D6 D8 I10
Gene Ontology
Biological Process
GO:0051260 protein homooligomerization
Cellular Component
GO:0005576 extracellular region

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8ekk, PDBe:8ekk, PDBj:8ekk
PDBsum8ekk
PubMed
UniProtA0A9R0BM17

[Back to BioLiP]