Structure of PDB 7qyr Chain E

Receptor sequence
>7qyrE (length=290) Species: 208964 (Pseudomonas aeruginosa PAO1) [Search protein sequence]
MKIAVLSRNPRLYSTRRLVEAGRERGHEMVVIDTLRAYMNIASHKPQIHY
RGQPLEGFDAVIPRIGASVTFYGCAVLRQFEMMGVFPLNESVAIARSRDK
LRSLQLLSRKGIGLPVTGFAHSPDDVPDLIEMVGGAPLVIKLLEGTQGIG
VVLCETEKAAESVLEAFMGLKHNIMVQEYIKEAGGADIRCFVVGDKVIAS
MKRQAAPGEFRSNLHRGGSASLIKITPEERMTAIRAARVMGLNVAGVDIL
RSNHGPLVMEVNSSPGLEGIESTTGKDIAGIIIQYLEKNG
3D structure
PDB7qyr Structural insights into the mechanism of adaptive ribosomal modification by Pseudomonas RimK.
ChainE
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.3.2.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide E S7 L12 Y13 S14 R64 G66 R189 N262 G266 S7 L12 Y13 S14 R64 G66 R189 N262 G266
BS02 ADP E K141 Y179 F210 S212 L250 M259 K141 Y179 F210 S212 L250 M259
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0016881 acid-amino acid ligase activity
GO:0018169 ribosomal S6-glutamic acid ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0009432 SOS response
GO:0036211 protein modification process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Cellular Component
External links
PDB RCSB:7qyr, PDBe:7qyr, PDBj:7qyr
PDBsum7qyr
PubMed36134899
UniProtQ9HTZ2|RIMK_PSEAE Probable alpha-L-glutamate ligase (Gene Name=rimK)

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