Structure of PDB 7pbm Chain E

Receptor sequence
>7pbmE (length=312) Species: 1308 (Streptococcus thermophilus) [Search protein sequence]
TLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTM
AFVIANEMGVNLKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMA
VEEVLYSAMEDYYIDIMIGAGETSRSVHLDLPPFTLVGATTRAGMLSNPL
RARFGINGHMEYYELPDLTEIVERTSEIFEMTITPEAALELARRSRGTPR
IANRLLKRVRDYAQIMGDGVIDDKIADQALTMLDVDHEGLDYVDQKILRT
MIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVAT
AKAYEHMGYDYT
3D structure
PDB7pbm Mechanism of AAA+ ATPase-mediated RuvAB-Holliday junction branch migration.
ChainE
Resolution3.2 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.6.4.12: DNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP E P22 Y28 G62 G64 T66 T67 Y181 P217 R218 P4 Y10 G44 G46 T48 T49 Y163 P199 R200
Gene Ontology
Molecular Function
GO:0000400 four-way junction DNA binding
GO:0003677 DNA binding
GO:0005524 ATP binding
GO:0009378 four-way junction helicase activity
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006281 DNA repair
GO:0006310 DNA recombination
GO:0032508 DNA duplex unwinding
Cellular Component
GO:0005737 cytoplasm
GO:0048476 Holliday junction resolvase complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pbm, PDBe:7pbm, PDBj:7pbm
PDBsum7pbm
PubMed36002576
UniProtQ5M2B1|RUVB_STRT2 Holliday junction branch migration complex subunit RuvB (Gene Name=ruvB)

[Back to BioLiP]