Structure of PDB 6y87 Chain E

Receptor sequence
>6y87E (length=460) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence]
SINPPQRIVFVGLGTIAQSFLPLLSKVHDLSTLEIYAIDPKTPPLIEYFA
NSFGLKFINSAIDQINYRDILVPILGEGTVLINLSTDVSSLALIELCRSA
GALYLDTCIEPWKGGYDDPTIPLHKRTNYHLREQMLSLKKRLGSGVTALV
AHGANPGLVSHFVKRALLDLAEEILGDCKKPSNKEQWAILSQRLGVKVIH
VAEYDSQISQKSRERGEFVNTWSVHGFISESQQPAELGWGSHERSLPTDA
SMHTDGCGAAIYIEKPGASVRVKTWTPFNGPSLGYLVTHHEAISIADFLT
LRTADETYRPTVHYAYRPSDEAILSVHEWFGNDCMTPEKTKVLRPGDILS
GSDYLGVLLMGHEKSSYWYGSILSIEKAKELATLNTATTLQVAAGVLSGY
LWILSHPSAGIIEAEDMDHEVALSYISQYLGELKGVYSDWNPTKNNPDSD
SPWLFSNFVL
3D structure
PDB6y87 Structural and catalytic characterization of Blastochloris viridis and Pseudomonas aeruginosa homospermidine synthases supports the essential role of cation-pi interaction.
ChainE
Resolution2.15 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.5.1.44: homospermidine synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAD E G17 T18 I19 D42 P43 I65 L87 S88 T89 V91 T110 G156 A157 N158 P159 V395 G14 T15 I16 D39 P40 I62 L84 S85 T86 V88 T107 G153 A154 N155 P156 V392
BS02 PUT E N158 E206 W225 E233 H292 N155 E203 W222 E230 H289
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016740 transferase activity
GO:0047296 homospermidine synthase activity

View graph for
Molecular Function
External links
PDB RCSB:6y87, PDBe:6y87, PDBj:6y87
PDBsum6y87
PubMed34605434
UniProtQ6X2Y9

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