Structure of PDB 6y5y Chain E

Receptor sequence
>6y5yE (length=281) Species: 1497391 (New Jersey polyomavirus-2013) [Search protein sequence]
EVLNIITATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLL
SVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLL
EAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIP
AKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNE
NSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADI
CGVLVKADNEAIRYRGLPRYFKVTLRKRAVK
3D structure
PDB6y5y Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family.
ChainE
Resolution1.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL E K296 D298 K256 D258
BS02 SIA E R69 E77 V78 H80 K296 N299 R29 E37 V38 H40 K256 N259
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6y5y, PDBe:6y5y, PDBj:6y5y
PDBsum6y5y
PubMed32723915
UniProtA0A024B5J2

[Back to BioLiP]