Structure of PDB 6smq Chain E

Receptor sequence
>6smqE (length=911) Species: 242619 (Porphyromonas gingivalis W83) [Search protein sequence]
QVVVLGYGTGQKLSTVSGSVAKVSSEKLAEKPVANIMDALQGQVAGMQVM
TTSGDPTAVASVEIHGTGSLGASSAPLYIVDGMQTSLDVVATMNPNDFES
MSVLKDASATSIYGARAANGVVFIQTKKGKMSERGRITFNASYGISQILN
TKPLDNMMTGDELLDFQVKAGFWGNNQTVQKVKDMILAGAEDLYGNYDSL
KDEYGKTLFPVDFNHDADWLKALFKTAPTSQGDISFSGGSQGTSYYASIG
YFDQEGMAREPANFKRYSGRLNFESRINEWLKVGANLSGAIANRRSADYF
GKYYMGSGTFGVLTMPRYYNPFDVNGDLADVYYMYGATRPSMTEPYFAKM
RPFSSESHQANVNGFAQITPIKGLTLKAQAGVDITNTRTSSKRMPNNPYD
STPLGERRERAYRDVSKSFTNTAEYKFSIDEKHDLTALMGHEYIEYEGDV
IGASSKGFESDKLMLLSQGKTGNSLSLPEHRVAEYAYLSFFSRFNYGFDK
WMYIDFSVRNDQSSRFGSNNRSAWFYSVGGMFDIYNKFIQESNWLSDLRL
KMSYGTTGNSEIGNYNHQALVTVNNYTEDAMGLSISTAGNPDLSWEKQSQ
FNFGLAAGAFNNRLSAEVDFYVRTTNDMLIDVPMPYISGFFSQYQNVGSM
KNTGVDLSLKGTIYQNKDWNVYASANFNYNRQEITKLFFGLNKYMLPNTG
TIWEIGYPNSFYMAEYAGIDKKTGKQLWYVPGQVDKVTTSQYSADLETRI
DKSVTPPITGGFSLGASWKGLSLDADFAYIVGKWMINNDRYFTENGGGLM
QLNKDKMLLNAWTEDNKETDVPKLGQSPQFDTHLLENASFLRLKNLKLTY
VLPNSLFAGQNVIGGARVYLMARNLLTVTKYKGFDPEAGGNVGKNQYPNS
KQYVAGIQLSF
3D structure
PDB6smq Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
ChainE
Resolution3.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 5PL E N523 H543 N421 H441
BS02 C8E E A482 V484 A380 V382
Gene Ontology
Cellular Component
GO:0009279 cell outer membrane

View graph for
Cellular Component
External links
PDB RCSB:6smq, PDBe:6smq, PDBj:6smq
PDBsum6smq
PubMed32393857
UniProtQ7MXJ7

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