Structure of PDB 6q9a Chain E

Receptor sequence
>6q9aE (length=177) Species: 562 (Escherichia coli) [Search protein sequence]
AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR
3D structure
PDB6q9a How a circularized tmRNA moves through the ribosome.
ChainE
Resolution3.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna E N37 G39 G41 T68 A70 R71 K72 F77 I79 K88 D123 N127 G131 R133 G151 L152 T157 N36 G38 G40 T67 A69 R70 K71 F76 I78 K87 D122 N126 G130 R132 G150 L151 T156
BS02 rna E M26 Q27 Q63 K64 L66 K69 T90 R92 M25 Q26 Q62 K63 L65 K68 T89 R91
BS03 rna E S73 V74 A75 R80 S72 V73 A74 R79
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:6q9a, PDBe:6q9a, PDBj:6q9a
PDBsum6q9a
PubMed30765567
UniProtP62399|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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