Structure of PDB 6pr5 Chain E

Receptor sequence

>6pr5E (length=480) Species: 7113 (Helicoverpa zea)

STIFSPEKALGLLLSLKLSKWQYITLRETTIREGSKEIYPSYYKVQKAKL
QCYPPKAFVAVTDSSAKIALQALLDLTVNRIFETIRSPDAIQNKQLILIS
KWGFDGASNQSRYKQNIESGQGDSSIFMTSLVPLKLTADGDTVWVNPKPC
SPMYCRPVQFSFVKETKDVVINEKTAMDDEIEALVPSKCQGHEISHKLMM
TMIDGKICTYLSEAKSNAACYLCLAKPTEMSKLDVIASKTISSGVYEFGL
STLHARINVMECLLHIAYRLDFKKWSARGEGHQELLHSRKKLIQDRFKDD
LNLLIDIVKQGSGTTNDGNTARRFFEFPDKTAAITGLDEDLIRRFSVILQ
AITSGEIIDVPKFKEYARTTAEKYVELYDWYYMSSTVHKLLIHGGDIIAE
NAIVPIGSLSEEASEARNKDFRRFREHHSRKKSRQASNEDILNMLIISSD
PLISFTRPKLDAHKRQTYFKETVELLQLQD

3D structure

• PDB: 6pr5 Structures of a RAG-like transposase during cut-and-paste transposition.
• Chain: E
• Resolution: 3.3 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	E	S39 K40 Y62 H447 H448 S449 R450 K451	S19 K20 Y42 H427 H428 S429 R430 K431
BS02	dna	E	S61 Y63 K64 S131 Y133 K134 Q135 K235 S236 K246 P247 T248 S296 V328 Q330 T334 K451 K452	S41 Y43 K44 S111 Y113 K114 Q115 K215 S216 K226 P227 T228 S276 V308 Q310 T314 K431 K432
BS03	dna	E	D224 G225 K226 N237 H274 N278 R289 A297 R298 Y401 T406	D204 G205 K206 N217 H254 N258 R269 A277 R278 Y381 T386
BS04	dna	E	K168 S171 M173 R276 R342 Q370 E432 K479 L480 H483 R485 Q486 T487	K148 S151 M153 R256 R322 Q350 E412 K459 L460 H463 R465 Q466 T467
BS05	dna	E	S128 H274 K329 S332 G333 T334 D337 G338 R343 E435 K439	S108 H254 K309 S312 G313 T314 D317 G318 R323 E415 K419
BS06	MG	E	D125 D224	D105 D204
BS07	MG	E	D125 E435	D105 E415
BS08	ZN	E	C240 C243 H408 H413	C220 C223 H388 H393

Gene Ontology

Molecular Function

• GO:0046872 metal ion binding

External links

• PDB: RCSB:6pr5, PDBe:6pr5, PDBj:6pr5
• PDBsum: 6pr5
• PubMed: 31723264
• UniProt: B0F0C5