Structure of PDB 6pij Chain E

Receptor sequence

>6pijE (length=339) Species: 666 (Vibrio cholerae) [Search protein sequence]

KLPTNLAYERSIDPSDVCFFVVWPDDRKTPLTYNSRTLLGQMEAKSLAYD
VSGQPIKSATAEALAQGNPHQVDFCHVPYGASHIECSFSVSFSSELRQPY
KCNSSKVKQTLVQLVELYETKIGWTELATRYLMNICNGKWLWKNTRKAYC
WNIVLTPWPWNGEKVGFEDIRTNYTSRQDFKNNKNWSAIVEMIKTAFSST
DGLAIFEVRATLHLPTNAMVRPSQVFTEKQNSRVFQSTTIDGERSPILGA
FKTGAAIATIDDWYPEATEPLRVGRFGVHREDVTCYRHPSTGKDFFSILQ
QAEHYIEVLSANKTPAQETINDMHFLMANLIKGGMFQHK

3D structure

PDB

6pij Structural basis of DNA targeting by a transposon-encoded CRISPR-Cas system.

Chain

Resolution

2.9 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	E	Y9 E10 R11 L39 L40 G41 Y101 W143 R222 Q225 V226 F227 Q247 F262 K263 A266 R283 R291 G344 G345 M346	Y8 E9 R10 L38 L39 G40 Y100 W142 R221 Q224 V225 F226 Q236 F251 K252 A255 R272 R280 G333 G334 M335
BS02	dna	E	M346 Q348	M335 Q337

External links

PDB	RCSB:6pij, PDBe:6pij, PDBj:6pij
PDBsum	6pij
PubMed	31853065

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