Structure of PDB 6ot3 Chain E

Receptor sequence

>6ot3E (length=177) Species: 562 (Escherichia coli) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR

3D structure

PDB

6ot3 The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy.

Chain

Resolution

3.9 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	E	K33 T35 N37 M38 G39 G41 T68 R71 G76 F77 I79 I85 K88 S121 D123 R125 S129 M130 G131 V132 G151 L152 D153 T155 T157	K32 T34 N36 M37 G38 G40 T67 R70 G75 F76 I78 I84 K87 S120 D122 R124 S128 M129 G130 V131 G150 L151 D152 T154 T156
BS02	rna	E	S24 V25 M26 Q63 K64 L66 K69 V89 T90 R92	S23 V24 M25 Q62 K63 L65 K68 V88 T89 R91
BS03	rna	E	S73 V74 A75 R80	S72 V73 A74 R79

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:6ot3, PDBe:6ot3, PDBj:6ot3
PDBsum	6ot3
PubMed	31189921
UniProt	P62399\|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

[Back to BioLiP]