Structure of PDB 5yol Chain E

Receptor sequence

>5yolE (length=143) Species: 470 (Acinetobacter baumannii) [Search protein sequence]

MAIERTLSIVKPDAVSKNHIGEIFARFEKAGLKIVATKMKHLSQADAEGF
YAEHKERGFFGDLVAFMTSGPVVVSVLEGENAVLAHREILGATNPKEAAP
GTIRADFAVSIDENAAHGSDSVASAEREIAYFFADNEICPRTR

3D structure

PDB

5yol Crystal structure of octameric form of Nucleoside diphosphate kinase from Acinetobacter baumannii at 2.2 A resolution

Chain

Resolution

2.2 Å

3D
structure

Catalytic site residues are labeled in the structure
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Enzymatic activity

Catalytic site (original residue number in PDB)	K11 Y51 N114 H117 E128
Catalytic site (residue number reindexed from 1)	K11 Y51 N114 H117 E128
Enzyme Commision number	2.7.4.6: nucleoside-diphosphate kinase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	MG	E	D120 S124	D120 S124

Gene Ontology

	Molecular Function
GO:0004550	nucleoside diphosphate kinase activity
GO:0005524	ATP binding
GO:0016301	kinase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006183	GTP biosynthetic process
GO:0006228	UTP biosynthetic process
GO:0006241	CTP biosynthetic process
GO:0009117	nucleotide metabolic process
GO:0009142	nucleoside triphosphate biosynthetic process
GO:0016310	phosphorylation

	Cellular Component
GO:0005737	cytoplasm

External links