Structure of PDB 5yb2 Chain E

Receptor sequence
>5yb2E (length=36) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence]
SGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL
3D structure
PDB5yb2 Structural Insights into the Mechanisms of Action of Short-Peptide HIV-1 Fusion Inhibitors Targeting the Gp41 Pocket
ChainE
Resolution3.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide E Q18 Q22 V25 I28 K29 Q32 Q18 Q22 V25 I28 K29 Q32
BS02 peptide E R12 A16 Q17 H19 L20 L23 W26 R12 A16 Q17 H19 L20 L23 W26
BS03 peptide E A33 R34 I35 L36 A33 R34 I35 L36
External links
PDB RCSB:5yb2, PDBe:5yb2, PDBj:5yb2
PDBsum5yb2
PubMed29535974
UniProtP04578|ENV_HV1H2 Envelope glycoprotein gp160 (Gene Name=env)

[Back to BioLiP]