Structure of PDB 5tkj Chain E

Receptor sequence

>5tkjE (length=219) Species: 10090 (Mus musculus) [Search protein sequence]

DFLMAQTPLSLPVSLGDQASISCRSSQSIVYSDGNTYLEWYLQRPGQSPK
LLIYKVSNRFSGVPDRFSGSGSGTDFTLRISRVEAEDLGIYYCFQGSHVP
YTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAK
VQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACE
VTHQGLSSPVTKSFNRGEC

3D structure

PDB

5tkj Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1.

Chain

Resolution

2.118 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	E	Y27D Y32 E34 G91 Y96	Y31 Y37 E39 G96 Y101

External links

PDB	RCSB:5tkj, PDBe:5tkj, PDBj:5tkj
PDBsum	5tkj
PubMed	29867235

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