Structure of PDB 5nme Chain E

Receptor sequence

>5nmeE (length=242) Species: 9606 (Homo sapiens) [Search protein sequence]

DAGVTQSPTHLIKTRGQQVTLRCSPKQGHDTVSWYQQALGQGPQFIFQYY
EEEERQRGNFPDRFSGHQFPNYSSELNVNALLLGDSALYLCASSDTVSYE
QYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP
DHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQ
DPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD

3D structure

PDB

5nme Dual Molecular Mechanisms Govern Escape at Immunodominant HLA A2-Restricted HIV Epitope.

Chain

Resolution

2.94 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	E	T96 V97 Y99	T96 V97 Y99

External links

PDB	RCSB:5nme, PDBe:5nme, PDBj:5nme
PDBsum	5nme
PubMed	29209312

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