Structure of PDB 5n28 Chain E

Receptor sequence
>5n28E (length=443) Species: 647171 (Methanotorris formicicus Mc-S-70) [Search protein sequence]
VKYEDKICLYNAKGELVEENVPLEAISPLYNPTIQKLVKDIKRTVAVNLA
GIENALKTGAVGGKACVIPGRTLDLPIVENAETIMEYVDKLLRISPDDDT
SVKLINDGKQMAVQLPSKRLEVAAEYSISMLNTAMALKEAIIKTFDVDMF
DAPMVHAAILGRYPQVPDYMGANIASLLGAPTNLEGLGYALRNIMVNHYV
ATTKKNIMNAVAFASIMEQTAMFEMGDAIGSFERLHLLGLAYQGLNADNL
VIDLVKANGKNGTVGTVVASIVERALEDGVITEDKKMPSGFVLYKPVDVA
KWNAYAAAGLVAAVIVNCGAARAAQNVASTILYYNDIIEYETGLPGVDFG
RAEGTAVGFSFFSHSIYGGGGPGIFNGNHIVTRHSKGFAIPPVCAAMCVD
AGTQMFSPEKTSALVGAVFSAIDEFREPLKYVIDGALAVKDKI
3D structure
PDB5n28 Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase from Methanococcales and Methanobacteriales.
ChainE
Resolution2.8 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) Y368
Catalytic site (residue number reindexed from 1) Y367
Enzyme Commision number 2.8.4.1: coenzyme-B sulfoethylthiotransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 TP7 E F362 Y368 G370 H380 F361 Y367 G369 H379
BS02 COM E F362 Y368 F361 Y367
Gene Ontology
Molecular Function
GO:0016740 transferase activity
GO:0050524 coenzyme-B sulfoethylthiotransferase activity
Biological Process
GO:0015948 methanogenesis

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5n28, PDBe:5n28, PDBj:5n28
PDBsum5n28
PubMed28559298
UniProtH1KXL9

[Back to BioLiP]