Structure of PDB 5mog Chain E

Receptor sequence

>5mogE (length=466) Species: 39946 (Oryza sativa Indica Group)

TKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDG
DWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSR
FDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQ
DGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF
LQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDG
TVKHFALTDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGV
PVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLE
LVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKT
PRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLC
AQSVVEDYKMLSRRSL

3D structure

• PDB: 5mog Structure of Phytoene Desaturase Provides Insights into Herbicide Binding and Reaction Mechanisms Involved in Carotene Desaturation.
• Chain: E
• Resolution: 2.77 Å

Enzymatic activity

• Enzyme Commision number: 1.3.5.5: 15-cis-phytoene desaturase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FAD	E	G111 G113 A115 E134 A135 G141 K142 I143 G157 L158 H159 I160 Y165 F283 R341 I342 T373 V403 G530 D531 S540 M541	G10 G12 A14 E33 A34 G40 K41 I42 G56 L57 H58 I59 Y64 F182 R240 I241 T272 V302 G429 D430 S439 M440
BS02	NRF	E	F162 A280 L281 R300 F423 A539	F61 A179 L180 R199 F322 A438

Gene Ontology

Molecular Function

• GO:0016166 phytoene dehydrogenase activity
• GO:0016491 oxidoreductase activity

Biological Process

• GO:0016117 carotenoid biosynthetic process

External links

• PDB: RCSB:5mog, PDBe:5mog, PDBj:5mog
• PDBsum: 5mog
• PubMed: 28669634
• UniProt: A2XDA1|PDS_ORYSI 15-cis-phytoene desaturase, chloroplastic/chromoplastic (Gene Name=PDS1)