Structure of PDB 5ixm Chain E

Receptor sequence
>5ixmE (length=538) Species: 632 (Yersinia pestis) [Search protein sequence]
MSGFLIPNAKFTSNNGFEFLLPYYWNIAPNFDATITPHYMERRGLQWQNE
FRYLLAPGSGTMALDWLPNDRIYTGPDGTDKNATRWLYYWGHSGVMDQVW
RFNINYTRVSDPAYFTDLTSQYGSTTDGYATQIFTAGYANENWNATLSSK
QFQVFTAAGNSNAYRAQPQLDMNYYKNDVGPFDMHVYGQAAKFTSVNPTN
PEASRFHIEPTVNLPLSNSWGSINTEAKLLATHYQQDIPASFADNASNPK
LKDSVNRVLPQFKVDGKVVFDRSMDWATGFTQTLEPRAQYLYVPYRNQDD
IYIYDTTLMQSDYSGLFRDRTYSGLDRIASANQVSTGLTSRIYDDARVER
FNVSVGQIYYFSRSRTGNTENSNATGSLVWAGDTFWRINDQLGLKGGAQY
DTRLGSLTLGNAIMEYRKDADRMIQLNYRYASPKYIQAAVPKVYQQGISQ
VGTTASWPIADRWAIVGAYYYDTKAKQPASQLVGLQYNTCCWAVNLGYER
KITGWNAQGQTSKYDNKIGFNITAQMLNSGILPYQSAF
3D structure
PDB5ixm Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens.
ChainE
Resolution2.746 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 C8E E Y289 F360 Y290 F361
BS02 C8E E G399 L409 G397 L407
BS03 C8E E R349 W388 R350 W386
Gene Ontology
Biological Process
GO:0061024 membrane organization
Cellular Component
GO:0019867 outer membrane

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5ixm, PDBe:5ixm, PDBj:5ixm
PDBsum5ixm
PubMed27161977
UniProtQ8ZIK3|LPTD_YERPE LPS-assembly protein LptD (Gene Name=lptD)

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