Structure of PDB 4y2d Chain E

Receptor sequence
>4y2dE (length=243) Species: 10090 (Mus musculus) [Search protein sequence]
KNYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQ
GKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCE
MYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQG
TSATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPQLVCHVSG
FYPKPVWVMEQQGTHRGDFLPNADETWYLQCRVKHSSLGGQDI
3D structure
PDB4y2d Structural modifications of alphaGalCer in both lipid and carbohydrate moiety influence activation of murine and human iNKT cells
ChainE
Resolution3.05 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FUC E S114 W129 G130 S109 W124 G125
BS02 7DW E C12 S28 F70 Y73 S76 D80 W133 D153 T156 C7 S23 F65 Y68 S71 D75 W128 D148 T151
External links
PDB RCSB:4y2d, PDBe:4y2d, PDBj:4y2d
PDBsum4y2d
PubMed
UniProtP11609|CD1D1_MOUSE Antigen-presenting glycoprotein CD1d1 (Gene Name=Cd1d1)

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