Structure of PDB 3m7n Chain E

Receptor sequence
>3m7nE (length=248) Species: 2234 (Archaeoglobus fulgidus) [Search protein sequence]
EKPEKLIVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAA
VFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVS
KEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPM
KGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQ
MDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEVGEEMDEITE
3D structure
PDB3m7n Quantitative analysis of processive RNA degradation by the archaeal RNA exosome
ChainE
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.13.-
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 rna E V86 R96 R97 D133 S136 R137 D180 V81 R91 R92 D128 S131 R132 D175
Gene Ontology
Molecular Function
GO:0000175 3'-5'-RNA exonuclease activity
GO:0004527 exonuclease activity
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters
Biological Process
GO:0006401 RNA catabolic process
GO:0016075 rRNA catabolic process
Cellular Component
GO:0000177 cytoplasmic exosome (RNase complex)
GO:0000178 exosome (RNase complex)
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:3m7n, PDBe:3m7n, PDBj:3m7n
PDBsum3m7n
PubMed20392821
UniProtO29757|RRP41_ARCFU Exosome complex component Rrp41 (Gene Name=rrp41)

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