Structure of PDB 3bwr Chain E

Receptor sequence
>3bwrE (length=264) [Search protein sequence]
IEVLGVKTDSFTEVECFLNPQMGNPDEHQKGLSKSLAAEKQFTDDSPDKE
QLPCYSVARIPLPNINEDLTCGNILMWEAVTVKTEVIGVTAMLNLHSGTQ
KTHENGAGKPIQGSNFHFFAVGGEPLELQGVLANYRTKYPAQTVTPKNAT
VDSQQMNTDHKAVLDKDNAYPVECWVPDPSKNENTRYFGTYTGGENVPPV
LHITNTATTVLLDEQGVGPLCKADSLYVSAVDICGLFTNTSGTQQWKGLP
RYFKITLRKRSVKN
3D structure
PDB3bwr Structural basis of GM1 ganglioside recognition by simian virus 40.
ChainE
Resolution2.25 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL E S68 L69 A70 Q84 S35 L36 A37 Q51
BS02 SIA E Q62 K67 S68 N272 S274 T276 Q278 Q29 K34 S35 N239 S241 T243 Q245
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:3bwr, PDBe:3bwr, PDBj:3bwr
PDBsum3bwr
PubMed18353982
UniProtP03087|VP1_SV40 Major capsid protein VP1

[Back to BioLiP]