Structure of PDB 2ckf Chain E

Receptor sequence
>2ckfE (length=433) Species: 279135 (Sphingomonas sp. CHY-1) [Search protein sequence]
MSGDTTLVDTVNASQSRQVFWDRDVYDLEIERIFSRAWLMLGHKSLLPKP
GDFITTYMAEDKIILSHQSDGTFRAFINSCTHRGNQICHADSGNAKAFVC
NYHGWVYGQDGSLVDVPLESRCYHNKLDKQELAAKSVRVETYKGFIFGCH
DPEAPSLEDYLGEFRFYLDTIWEGGGAGLELLGPPMKSLLHCNWKVPVEN
FVGDGYHVGWTHAAALGQGLQFTTRHGHGFGVIDNAAAAIHRKGDGWNKY
LEDTRGEVRRKFGADRERLYVGHWNGAIFPNCSFLYGTNTFKIWHPRGPH
EIEVWTYTMVPSDADPATKSAIQREATRTFGTAGTLESDDGENMSSATYV
NRGVITRDGMMNSTMGVGYEGPHPVYPGIVGISFIGETSYRGFYRFWKEM
IDAPDWASVKANDDNWDSVFTNRNFWNEKLNAA
3D structure
PDB2ckf The Catalytic Pocket of the Ring-Hydroxylating Dioxygenase from Sphingomonas Chy-1.
ChainE
Resolution1.85 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) H103 D204 H207 H212 D360
Catalytic site (residue number reindexed from 1) H103 D204 H207 H212 D340
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 FES E C80 H82 R83 C100 Y102 H103 W105 C80 H82 R83 C100 Y102 H103 W105
BS02 FE E H207 H212 D360 H207 H212 D340
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
GO:0051537 2 iron, 2 sulfur cluster binding
Biological Process
GO:0009056 catabolic process
GO:0044237 cellular metabolic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:2ckf, PDBe:2ckf, PDBj:2ckf
PDBsum2ckf
PubMed17157819
UniProtQ65AT1

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