Structure of PDB 4v5s Chain DZ

Receptor sequence
>4v5sDZ (length=183) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
YRLKAYYREGEKPSALRRAGKLPGVMYNRHLNRKVYVDLVEFDKVFRQAS
IHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYVPL
RFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHA
SDLKLPPGVELAVSPEETIAAVVPPEVEKLAEE
3D structure
PDB4v5s How Mutations in tRNA Distant from the Anticodon Affect the Fidelity of Decoding.
ChainDZ
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna DZ K46 A113 G114 I146 H151 E169 T170 V175 K44 A111 G112 I144 H149 E167 T168 V173
BS02 rna DZ R10 R19 V27 Y29 N30 R31 R72 Q73 R79 E84 H85 D87 F89 R8 R17 V25 Y27 N28 R29 R70 Q71 R77 E82 H83 D85 F87
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4v5s, PDBe:4v5s, PDBj:4v5s
PDBsum4v5s
PubMed21378964
UniProtQ5SHZ1|RL25_THET8 Large ribosomal subunit protein bL25 (Gene Name=rplY)

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