Structure of PDB 4v5p Chain DZ

Receptor sequence
>4v5pDZ (length=176) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
YRLKAYYREGEKPSALRRAGKLPGVMYNRHLNRKVYVDLVEFDKVFRQAS
IHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYVPL
RFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHA
SDLKLPPGVELAVSPEETIAAVVPPE
3D structure
PDB4v5p How Mutations in tRNA Distant from the Anticodon Affect the Fidelity of Decoding.
ChainDZ
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna DZ K46 V111 R112 A113 I146 H151 E169 T170 K44 V109 R110 A111 I144 H149 E167 T168
BS02 rna DZ R10 P15 R19 G26 V27 Y29 N30 R31 R72 Q73 N75 R79 E84 H85 D87 F89 R8 P13 R17 G24 V25 Y27 N28 R29 R70 Q71 N73 R77 E82 H83 D85 F87
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4v5p, PDBe:4v5p, PDBj:4v5p
PDBsum4v5p
PubMed21378964
UniProtQ5SHZ1|RL25_THET8 Large ribosomal subunit protein bL25 (Gene Name=rplY)

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