Structure of PDB 4v5f Chain DZ

Receptor sequence
>4v5fDZ (length=184) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
YRLKAYYREGEKPSALRRAGKLPGVMYNRHLNRKVYVDLVEFDKVFRQAS
IHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYVPL
RFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHA
SDLKLPPGVELAVSPEETIAAVVPPEDVEKLAEE
3D structure
PDB4v5f The structure of the ribosome with elongation factor G trapped in the posttranslocational state.
ChainDZ
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna DZ R112 I146 E169 T170 V175 P176 R110 I144 E167 T168 V173 P174
BS02 rna DZ R10 P15 R19 V27 Y29 N30 R31 N34 R72 Q73 N75 K78 H85 D87 F89 R8 P13 R17 V25 Y27 N28 R29 N32 R70 Q71 N73 K76 H83 D85 F87
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:4v5f, PDBe:4v5f, PDBj:4v5f
PDBsum4v5f
PubMed19833919
UniProtQ5SHZ1|RL25_THET8 Large ribosomal subunit protein bL25 (Gene Name=rplY)

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