Structure of PDB 4v53 Chain DY

Receptor sequence
>4v53DY (length=58) Species: 562 (Escherichia coli) [Search protein sequence]
AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAV
SFMVKVEE
3D structure
PDB4v53 Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.
ChainDY
Resolution3.54 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna DY L16 H19 F52 L16 H19 F52
BS02 rna DY S11 I13 P17 K18 A21 T22 L24 G25 G27 R29 R30 I31 R37 E38 A42 G45 M46 S11 I13 P17 K18 A21 T22 L24 G25 G27 R29 R30 I31 R37 E38 A42 G45 M46
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4v53, PDBe:4v53, PDBj:4v53
PDBsum4v53
PubMed17660832
UniProtP0AG51|RL30_ECOLI Large ribosomal subunit protein uL30 (Gene Name=rpmD)

[Back to BioLiP]