Structure of PDB 4v5d Chain DX

Receptor sequence
>4v5dDX (length=92) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
TAYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVV
KVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVAPGQKIEALEG
3D structure
PDB4v5d Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome.
ChainDX
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna DX S14 K16 K25 T35 K36 T37 E38 K40 N41 E44 K53 N55 T56 L57 H58 R60 K62 K64 L66 Y69 L70 G71 K72 R73 K78 S12 K14 K23 T33 K34 T35 E36 K38 N39 E42 K51 N53 T54 L55 H56 R58 K60 K62 L64 Y67 L68 G69 K70 R71 K76
BS02 MG DX E23 Q82 E21 Q80
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:4v5d, PDBe:4v5d, PDBj:4v5d
PDBsum4v5d
PubMed19363482
UniProtQ5SHP0|RL23_THET8 Large ribosomal subunit protein uL23 (Gene Name=rplW)

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