Structure of PDB 4v9d Chain DW

Receptor sequence

>4v9dDW (length=75) Species: 83333 (Escherichia coli K-12)

RNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLF
AKADGKVKFEVKGPKNRKFISIEAE

3D structure

• PDB: 4v9d Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.
• Chain: DW
• Resolution: 3.0 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	DW	N8 R10 D11 S12 E13 A14 K15 R16 K20 F22 G23 E25 L28 A29 G30 S31 I32 R35 R37 G38 T39 K40 F41 G50 R51 D52 H53 F56 F65 K71 R73 K74	N2 R4 D5 S6 E7 A8 K9 R10 K14 F16 G17 E19 L22 A23 G24 S25 I26 R29 R31 G32 T33 K34 F35 G44 R45 D46 H47 F50 F59 K65 R67 K68
BS02	rna	DW	K68 P70 N72	K62 P64 N66

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome

External links

• PDB: RCSB:4v9d, PDBe:4v9d, PDBj:4v9d
• PDBsum: 4v9d
• PubMed: 21596992
• UniProt: P0A7L8|RL27_ECOLI Large ribosomal subunit protein bL27 (Gene Name=rpmA)