Structure of PDB 4v52 Chain DT

Receptor sequence
>4v52DT (length=93) Species: 562 (Escherichia coli) [Search protein sequence]
MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKL
FEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNL
3D structure
PDB4v52 Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.
ChainDT
Resolution3.21 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna DT M1 I2 H15 S17 E18 M24 T39 K40 K49 N59 L61 V62 K64 K66 R69 Q72 R73 R76 S78 K82 Y84 M1 I2 H15 S17 E18 M24 T39 K40 K49 N59 L61 V62 K64 K66 R69 Q72 R73 R76 S78 K82 Y84
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4v52, PDBe:4v52, PDBj:4v52
PDBsum4v52
PubMed17660832
UniProtP0ADZ0|RL23_ECOLI Large ribosomal subunit protein uL23 (Gene Name=rplW)

[Back to BioLiP]