Structure of PDB 4v54 Chain DP

Receptor sequence
>4v54DP (length=114) Species: 562 (Escherichia coli) [Search protein sequence]
SNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIR
NRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLR
ERTGKAARIKERLN
3D structure
PDB4v54 Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.
ChainDP
Resolution3.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna DP R38 Q40 K105 R108 R38 Q40 K105 R108
BS02 rna DP S1 N2 R20 N51 R52 H55 Q74 R92 K93 A94 K95 Y97 Y98 R102 S1 N2 R20 N51 R52 H55 Q74 R92 K93 A94 K95 Y97 Y98 R102
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:4v54, PDBe:4v54, PDBj:4v54
PDBsum4v54
PubMed17660832
UniProtP0A7K6|RL19_ECOLI Large ribosomal subunit protein bL19 (Gene Name=rplS)

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