Structure of PDB 4w2i Chain DO

Receptor sequence
>4w2iDO (length=122) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRG
AVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFG
PVARELREKGFMKIVSLAPEVL
3D structure
PDB4w2i Negamycin Interferes with Decoding and Translocation by Simultaneous Interaction with rRNA and tRNA.
ChainDO
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna DO N13 P48 R49 R97 N13 P48 R49 R97
BS02 rna DO M1 Q3 Q5 T6 Y7 I22 R23 L25 K26 S28 N29 A30 K31 Y32 S42 K44 V57 K66 K67 E68 K70 R78 N82 M1 Q3 Q5 T6 Y7 I22 R23 L25 K26 S28 N29 A30 K31 Y32 S42 K44 V57 K66 K67 E68 K70 R78 N82
BS03 MG DO Y7 N82 Y7 N82
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:4w2i, PDBe:4w2i, PDBj:4w2i
PDBsum4w2i
PubMed25306922
UniProtQ5SHP8|RL14_THET8 Large ribosomal subunit protein uL14 (Gene Name=rplN)

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