Structure of PDB 4v83 Chain DO

Receptor sequence
>4v83DO (length=98) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence]
KFRVRNRIKRTGRLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKG
NKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRVKALAEGAREG
3D structure
PDB4v83 Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome.
ChainDO
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna DO K11 F12 R13 R17 I18 T21 F87 R89 K93 Y94 R106 K1 F2 R3 R7 I8 T11 F77 R79 K83 Y84 R96
BS02 rna DO R15 K19 R25 F29 R30 S31 L32 H34 Y36 Q38 G45 V46 T47 S50 A55 K62 T63 K93 H95 G96 R97 R5 K9 R15 F19 R20 S21 L22 H24 Y26 Q28 G35 V36 T37 S40 A45 K52 T53 K83 H85 G86 R87
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

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Cellular Component
External links
PDB RCSB:4v83, PDBe:4v83, PDBj:4v83
PDBsum4v83
PubMed21245352
UniProtQ72I20|RL18_THET2 Large ribosomal subunit protein uL18 (Gene Name=rplR)

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