Structure of PDB 4v4h Chain DO

Receptor sequence
>4v4hDO (length=117) Species: 562 (Escherichia coli) [Search protein sequence]
MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVA
ASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYH
GRVQALADAAREAGLQF
3D structure
PDB4v4h Structural analysis of kasugamycin inhibition of translation.
ChainDO
Resolution3.46 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna DO M1 K3 R10 R25 V27 H29 R33 E46 V47 V49 V54 E55 N67 K68 F97 H100 G101 R102 M1 K3 R10 R25 V27 H29 R33 E46 V47 V49 V54 E55 N67 K68 F97 H100 G101 R102
BS02 rna DO R9 R13 R15 R16 K17 F92 Y99 R111 F117 R9 R13 R15 R16 K17 F92 Y99 R111 F117
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:4v4h, PDBe:4v4h, PDBj:4v4h
PDBsum4v4h
PubMed16998486
UniProtP0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)

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